Publicaciones en VIVO

Mapa de la ciencia

Red de Coinvestigador

RODRIGUEZ VALERA, FRANCISCO EDUARDO

Person (Active)

Positions

Catedrático/a de Universidad, Producción Vegetal y Microbiología 2007 -
Profesor/a Emérito/a, Producción Vegetal y Microbiología 2022 -
MIEMBRO, Evolutionary Genomics Group 2010 -
Catedrático de Universidad, Producción Vegetal y Microbiología 2000 - 2007
Catedrático de Universidad, DPTO. CC.EE. TECNOLOGIA 1997 - 2000

Publications
Research
Teaching
Service
Contact
Otro
Ver todos

supported publications or other works

selected publications

academic article
- Microdiversity in marine pelagic ammonia-oxidizing archaeal populations in a Mediterranean long-read metagenome. ENVIRON MICROBIOL. 1-13. 2024
- A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean. ISCIENCE. 1-16. 2023
- A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics. ENVIRONMENTAL MICROBIOME. 1-12. 2023
- Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes.. MSYSTEMS. 1-18. 2023
- Single-amplified genomes reveal most streamlined free-living marine bacteria. ENVIRON MICROBIOL. 1136-1154. 2023
- Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples.. MSYSTEMS. 1-12. 2022
- Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics.. FRONTIERS IN MICROBIOLOGY. 1-15. 2021
- Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle.. MSYSTEMS. 1-16. 2021
- The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics. ENVIRONMENTAL MICROBIOME. 1-15. 2021
- Viral rhodopsins 1 are an unique family of light-gated cation channels. NATURE COMMUNICATIONS. 5707-5709. 2020
- Alteromonas Myovirus V22 Represents a New Genus of Marine Bacteriophages Requiring a Tail Fiber Chaperone for Host Recognition. MSYSTEMS. 217-20. 2020
- Ecogenomics of the SAR11 clade.. ENVIRON MICROBIOL. 2020
- Genomes of the ¿Candidatus Actinomarinales¿ Order: Highly Streamlined Marine Epipelagic Actinobacteria. MSYSTEMS. 1-19. 2020
- Genomes of the ¿Candidatus Actinomarinales¿ Order: Highly Streamlined Marine Epipelagic Actinobacteria. MSYSTEMS. 1-19. 2020
- Genomic Comparison and Spatial Distribution of Different Synechococcus Phylotypes in the Black Sea.. FRONTIERS IN MICROBIOLOGY. 1979-1980. 2020
- High-resolution structural insights into the heliorhodopsin family. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME. 1-11. 2020
- High-resolution structural insights into the heliorhodopsin family.. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, BIOLOGICAL SCIENCES (NASB). 4131-4141. 2020
- Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments.. MSYSTEMS. 905. 2020
- Microorganisms of Lake Baikal-the deepest and most ancient lake on Earth. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. 6079-6090. 2020
- New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal. MICROBIOME. 163-170. 2020
- The Evolutionary Success of the Marine Bacterium SAR11 Analyzed through a Metagenomic Perspective. MSYSTEMS. 1-13. 2020
- The Evolutionary Success of the Marine Bacterium SAR11 Analyzed through a Metagenomic Perspective. MSYSTEMS. 605-20. 2020
- Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil. MICROBIOME. 1-16. 2020
- Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil.. MICROBIOME. 17. 2020
- CRISPR analysis suggests that small circular single-stranded DNA smacoviruses infect Archaea instead of humans.. NATURE COMMUNICATIONS. 294-303. 2019
- Charting the diversity of uncultured viruses of Archaea and Bacteria. BMC BIOLOGY. 2019
- Ecogenomics of teh SAR11 clade. ENVIRON MICROBIOL. 2019
- Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype. MBIO. 1-18. 2019
- Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype.. MBIO. 2852-18. 2019
- Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya.. MICROBIOME. 29. 2019
- Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome.. MICROBIOME. 117-130. 2019
- Microbiome of the deep lake Baikal, a unique oxic bathypelagic habitat. LIMNOLOGY AND OCEANOGRAPHY. 2019
- Minimum Information about an Uncultivated Virus Genome (MIUViG).. NATURE BIOTECHNOLOGY. 29-37. 2019
- Numerous cultivated and uncultivated viruses encode ribosomal proteins.. NATURE COMMUNICATIONS. 752. 2019
- Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics. FRONTIERS IN MICROBIOLOGY. 2019
- Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics.. FRONTIERS IN MICROBIOLOGY. 1-14. 2019
- Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea.. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME. 15645-15650. 2019
- Trends of Microdiversity Reveal Depth-Dependent Evolutionary Strategies of Viruses in the Mediterranean.. MSYSTEMS. 554-19. 2019
- Unique structure and function of viral rhodopsins.. NATURE COMMUNICATIONS. 4939-4949. 2019
- "Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise".. ISME JOURNAL. 981-996. 2018
- Ecological and genomic features of two widespread freshwater picocyanobacteria.. ENVIRON MICROBIOL. 1-26. 2018
- Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment.. MICROBIOME. 1-19. 2018
- Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes.. ENVIRON MICROBIOL. 1-9. 2018
- Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean.. ISME JOURNAL. 1-6. 2018
- Thousands of Novel Endolysins Discovered in Uncultured Phage Genomes. FRONTIERS IN MICROBIOLOGY. 1-8. 2018
- Eel microbiome reveals that skin mucus of fish is a natural niche for aquatic intestinal pathogen evolution. BMC MICROBIOLOGY. 1-15. 2017
- Benefit from decline: The primary transcriptome of Alteromonas macleodii str. Te101 during Trichodes. ISME JOURNAL. 1-13. 2017
- Fast iodide-SAD phasing for high-throughput membrane protein structure determination.. ADVANCED RESEARCH IN LIFE SCIENCES. 2017
- Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters.. PLOS GENETICS. 1-23. 2017
- Genomes of novel microbial lineages assembled from the sub-ice waters of Lake Baikal.. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 1-12. 2017
- Inward H+ pump xenorhodopsin: Mechanism and alternative optogenetic approach.. ADVANCED RESEARCH IN LIFE SCIENCES. 1-10. 2017
- Networking in microbes: conjugative elements and plasmids in the genus Alteromonas.. BMC GENOMICS. 1-15. 2017
- New insights into marine group III Euryarchaeota, from dark to light.. ISME JOURNAL. 1-16. 2017
- Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs.. FRONTIERS IN MICROBIOLOGY. 2017
- Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs.. FRONTIERS IN MICROBIOLOGY. 1-17. 2017
- Single-virus genomics reveals hidden cosmopolitan and abundant viruses.. NATURE COMMUNICATIONS. 2017
- The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling. ISME JOURNAL. 1-14. 2017
- Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface. BMC GENOMICS. 2017
- "Haloquadratum". WILEY INTERDISCIPLINARY REVIEWS-DEVELOPMENTAL BIOLOGY. 1-27. 2016
- Flexible genomic islands as drivers of genome evolution.. CURRENT OPINION IN MICROBIOLOGY. 154-160. 2016
- Genome reconstruction from metagenomic datasets reveals novel microbes in the brackish waters of the Caspian Sea.. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 1599-1612. 2016
- Genomes of Abundant and Widespread Viruses from the Deep Ocean. MBIO. 1-9. 2016
- Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines.. FRONTIERS IN MICROBIOLOGY. 1-18. 2016
- Metagenomic recovery of phage genomes of uncultured freshwater actinobacteria.. ISME JOURNAL. 1-5. 2016
- Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea.. FRONTIERS IN MICROBIOLOGY. 1-15. 2016
- Pangenome evolution in the marine bacterium Alteromonas.. GENOME BIOLOGY AND EVOLUTION. 1-41. 2016
- Thalassospira australica sp. nov. isolated from sea water.. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICR. 2016
- The discovery of CRISPR in archaea and bacteria. FEBS JOURNAL. 1-8. 2016
- Diversity of the cell-wall associated genomic island of the archaeon Haloquadratum walsbyi.. BMC GENOMICS. 1-12. 2015
- A new class of marine Euryarchaeota group II from the mediterranean deep chlorophyll maximum. . ISME JOURNAL. 1-16. 2015
- Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics. . MBIO. 1-11. 2015
- Marine Group II Archaea, potentially important players in the global ocean carbon cycle.. FRONTIERS IN MICROBIOLOGY. 1-9. 2015
- Pseudorhizobium pelagicum gen. nov., sp. nov.Isolated from a pelagic Mediterranean zone.. SYSTEMATIC AND APPLIED MICROBIOLOGY. 1-7. 2015
- Replicating phages in the epidermal mucosa of the eel (Anguilla anguilla). FRONTIERS IN MICROBIOLOGY. 1-10. 2015
- Spiribacter curvatus sp. nov., a new moderately halophilic bacterium from Santa Pola saltern in Spain.. INT J SYST EVOL MICR. 2015
- Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach. FRONTIERS IN MICROBIOLOGY. 1-12. 2014
- Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov.. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICR. 1-14. 2014
- Evidence for rmetaviromic islands in marine phages. FRONTIERS IN MICROBIOLOGY. 1-10. 2014
- From metagenomics to pure culture: Isolation and characterization of the Moderately halophilic bacterium Spiribacte salinus gen.nov.sp.nov. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 3850-3857. 2014
- Genome Sequence of Thalassospira australica¿ NP3b2T Isolated from St. Kilda Beach, Tasman Sea. GENOME ANNOUNCEMENTS. 1-2. 2014
- Genomes of Alteromonas australica, a world apart. BMC GENOMICS. 483-510. 2014
- Genomes of Two New Ammonia-Oxidizing Archaea. PLOS ONE. 1-10. 2014
- Haloarcula marismortui archaellin genes as ecoparalogs. EXTREMOPHILES. 341-349. 2014
- Homologous recombination is involved in the diversity of replacement flexible genomic islands in aquatic prokaryotes. FRONTIERS IN GENETICS. 1-9. 2014
- Key roles for freshwater Actinobacteria revealed by deep metagenomic. MOLECULAR ECOLOGY. 1-41. 2014
- Metagenomics of ancient fermentation pits used for the production of chinese strong-aroma liquor . GENOME ANNOUNCEMENTS. 1-2. 2014
- Metagenomics of the Mucosal Microbiota of European Eels. GENOME ANNOUNCEMENTS. 1-2. 2014
- Pangenome Evidence for Extensive Interdomain Horizontal. GENOME BIOLOGY AND EVOLUTION. 1549-1563. 2014
- Prokaryotic taxonomic and metabolic diversity of an. FEMS MICROBIOLOGY ECOLOGY. 623-635. 2014
- RNA sequencing provides evidence for functional. BMC GENOMICS. 1-14. 2014
- Tales from a thousand and one phages. BIOSCIENCE. 1-6. 2014
- The Santa Pola saltern as a model for studying the microbiota. EXTREMOPHILES. 811-824. 2014
- A Hybrid NRPS-PKS Gene Cluster Related to the Bleomycin Family of Antitumor Antibiotics in Alteromonas macleodii Strains. PLOS ONE. 2013
- Draft Genome Sequence of an Ammonia-Oxidizing Archaeon "Candidatus Nitrosopumilus sediminis"AR2, from Svalbard in the Artic Circle.. JOURNAL OF BACTERIOLOGY. 6948-6949. 2013
- Draft Genome of Spiribacter salinus M19-40, an Abundant Gammaproteobacterium in Aquatic Hypersaline Environments.. GENOME. 179-212. 2013
- Expanding the virosphere using Metagenomics. PLOS GENETICS. 1-13. 2013
- Genomes of Spiribacter, a streamlined, successful halophilic bacterium.. BMC GENOMICS. 1471-2164. 2013
- Genomic diversity of "deep ecotype" Alteromonas macleodii isolates: evidence for Pan-Mediterranean clonal frames.. GENOME BIOLOGY AND EVOLUTION. 1220-1232. 2013
- Intra and Intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains.. MICROBIAL ECOLOGY. 1-11. 2013
- Metagenome sequencing of prokaryotic microbiota from hypersaline ponds of a marine saltern in Santa Pola, Spain.. GENOME. 933-1013. 2013
- Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria.. SCIENTIFIC REPORTS. 2471-2473. 2013
- Novel Group of podovirus infecting the marine bacterium.. BIOSCIENCE. 2. 2013
- Complete Genome Sequence of the Copiotrophic Marine Bacterium Alteromonas macleodii Strain ATCC 27126T.. JOURNAL OF BACTERIOLOGY. 6998-7001. 2012
- Draft genome sequence of sulfur-oxidizing bacteria Candidatus Sulfurovum sediminum AR belonging to the Epsilon-proteobacteria.. JOURNAL OF BACTERIOLOGY. 4128-4129. 2012
- Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph.. SCIENTIFIC REPORTS. 1-11. 2012
- Metagenomes of Mediterranean Coastal Lagoons. SCIENTIFIC REPORTS. 1-13. 2012
- Polyclonality of concurrent natural populations of Alteromonas macleodii.. GENOME BIOLOGY AND EVOLUTION. 1-22. 2012
- Reconstructing viral genomes from the environment using fosmid clones: the case of haloviruses.. PLOS ONE. 3-3. 2012
- Reconstruction of Novel Cyanobacterial Siphovirus Genomes from Mediterranean Metagenomic Fosmids. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 1-25. 2012
- Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC.. ENVIRON MICROBIOL. 2011
- Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea. ISME JOURNAL. 1291-1302. 2011
- Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River. PLOS ONE. 2011
- New Abundant Microbial Groups in Aquatic Hypersaline Environments. SCIENTIFIC REPORTS. 1-20. 2011
- Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing. ISME JOURNAL. 1154-1166. 2010
- The bacterial pan-genome:a new paradigm in microbiology. INTERNATIONAL MICROBIOLOGY. 45-57. 2010
- Viral and microbial community dynamics in four aquatic environments. ISME JOURNAL. 739-751. 2010
- CO Dehydrogenase Genes Found in Metagenomic Fosmid Clones from the Deep Mediterranean Sea. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 7436-7444. 2009
- Explaining microbial population genomics through phage predation . NATURE REVIEWS MICROBIOLOGY. 828-836. 2009
- Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber . BMC GENOMICS. 570-577. 2009
- "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter". ISME JOURNAL. 1194-1212. 2008
- "Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions". ISME JOURNAL. 865-886. 2008
- Adapting to environmental changes using specialized paralogs. TRENDS IN GENETICS. 154-158. 2008
- Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis . MOLECULAR ECOLOGY. 2704-2717. 2008
- Comparative analysis of genome fragments of Acidobacteria from deep Mediterranean plankton. ENVIRON MICROBIOL. 2704-2717. 2008
- Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. ISME JOURNAL. 1194-1212. 2008
- Genomic Plasticity in Prokaryotes: the Case of the Square Haloarchaeon. ISME JOURNAL. 235-245. 2008
- Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions. ISME JOURNAL. 865-886. 2008
- Metagenomic of the deep Mediterranean, a warm bathypelagic habitat. PLOS ONE. 914-919. 2008
- Adaptation of the Salinibacter ruber proteome to changing salinity by specialized paralogs: the concept of ecoparalogs. . TRENDS IN GENETICS. 2007
- Evolution of rhodopsin ion pumps in haloarchaea. BMC EVOLUTIONARY BIOLOGY. 79. 2007
- Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. INT J SYST EVOL MICR. 387-392. 2007
- Intragenomic 16S rDNA Divergence in Haloarcula marismortui Is an Adaptation to Different Temperatures . JOURNAL OF MOLECULAR EVOLUTION. 687-696. 2007
- Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures.. JOURNAL OF MOLECULAR EVOLUTION. 501-510. 2007
- Metagenomics of the deep Mediterranean, a warm bathypelagic habitat. PLOS ONE. 1-15. 2007
- Comparison of prokaryotic diversity at two offshore oceanic locations reveals a different microbiota in the Mediterranean Sea. FEMS MICROBIOLOGY ECOLOGY. 389-405. 2006
- Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species. BMC GENOMICS. 171-184. 2006
- IWoCS: analyzing ribosomal Intergenic Transcribed Spacer configuration and taxonomic relationships.. BIOINFORMATICS. 527-531. 2006
- Metagenomic analysis of mesopelagic Antarctic plankton reveals a novel deltaproteobacterial group. MICROBIOLOGY. 505-517. 2006
- The Neolithic revolution of bacterial genomes. TRENDS IN MICROBIOLOGY. 200-206. 2006
- The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity. BMC GENOMICS. 169-182. 2006
- Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii. JOURNAL OF CLINICAL MICROBIOLOGY. 4382-4390. 2005
- Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea. ENVIRON MICROBIOL. 649-659. 2005
- Micro-Mar: a database for dynamic representation of marine microbial biodiversity. BMC BIOINFORMATICS. 222-226. 2005
- The genome of Salinibacter ruber: Convergence and gene exchange among hyperhalophilic bacteria and archaea. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME. 18147-18152. 2005
- Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectomycin-like operon and several energy metabolisma genes. ENVIRON MICROBIOL. 959-969. 2004
- Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers. ENVIRON MICROBIOL. 19-34. 2004
- Comprative Genomics of gene family size in closely-related bacteria. GENOME BIOLOGY. 1-15. 2004
- Environmental Genomics, the big picture?. FEMS MICROBIOLOGY LETTERS. 153-158. 2004
- Evolutionary relationship of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics. BMC EVOLUTIONARY BIOLOGY. 1-17. 2004
- Frequent Recombination in a Saltern Population of Halorubrum. SCIENCE. 1928-1929. 2004
- Genetic analysis of housekeeping genes reveals a deep ecotype of Alteronomas macleodii in the Mediterranean Sea. ENVIRON MICROBIOL. 620-630. 2004
- Isolation and cultivation of Walsby, square archaeon . ENVIRON MICROBIOL. 1287-1291. 2004
- Amplified-Fragment Length Polymorphism as a Complement to IS6110-Based Restriction Fragment Lenght Polymorphism Analysis for Molecular Typing of Mycobacterium tuberculosis. JOURNAL OF CLINICAL MICROBIOLOGY. 4820-4822. 2003
- Amplified-fragment lenght polymorphism as a complement to IS6110-based restriction fragment lenght polymorphism análisis for molecular typing of Mycobacterium tuberculosis. JOURNAL OF CLINICAL MICROBIOLOGY. 4820-4822. 2003
- Charaterization of Microbial diversity in Hypersaline Environments by Melting Profiles and Reassociation Kinetics in Combination with Terminal Restriction Fragment Lenght Polymorphism (T-RFLP). MICROBIAL ECOLOGY. 291-301. 2003
- Description of alcanivorax venustensis sp. nov. and reclassification of Fundibacter jadensis DSM 121 78T (Bruns and Berthe-corti 1999) as alcanivorax jadensis comb. nov., members of the emended genus Alcanivorax. INT J SYST EVOL MICR. 331-338. 2003
- Diversity of Bacteria and Archaea in sulphate-reducing enrichment cultures incoculated from serial dilution of Zostera noltii rhizosphere samples. ENVIRON MICROBIOL. 754-764. 2003
- Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern. ENVIRON MICROBIOL. 1039-1045. 2003
- Approaches to prokaryotic biodiversity: a population genetics perspective.. ENVIRON MICROBIOL. 628-633. 2002
- Changes in archaeal, bacterial and eukaryal assenblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern.. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 338-348. 2002
- Detection and identifcation of bacterial DNA in patients with cirrhosis and culture-negative, nonneutrocylic ascites.. HEPATOLOGY. 135-141. 2002
- Molecular characterization of a Spanish isolate of Mycobacterium malmoense. RESEARCH IN MICROBIOLOGY. 33-36. 2002
- Prevalence and microdiversity of Alteromonas macleodii-like microorganisms in differente oceanic regions.. ENVIRONMENTAL MICROBIOLOGY. 42-50. 2002
- Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern.. ENVIRONMENTAL MICROBIOLOGY. 349-360. 2002
- Salinibacter ruber gen.no. sp. nov. a new species of extremely holophilic bacteria from saltern crystalizer ponds.. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 485-491. 2002
- Sequence diversity of the internal transcribed spacer (ITS) region of the rRNA operons among different serogroups of Legionella pheumophila isolates.. SYSTEMATIC AND APPLIED MICROBIOLOGY. 212-219. 2002
- Talassospira Lucenti gen. nov. sp. nov. a new genus and species of marine Proteobacteria.Inte.. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 1277-1283. 2002
- Toward the monophyly of Haeckel`s radiolaria: 18S rRNA environmental data support the sisterhood of polycystinea and acantharea.. MOLECULAR BIOLOGY AND EVOLUTION. 118-121. 2002
- A novel haloarchaeal related lineage is widely distributed in deep oceanic regions.. ENVIRONMENTAL MICROBIOLOGY. 72-78. 2001
- Application of molecular biology techniques to the diagnosis of nontuberculous mycobacterial infections. APMIS. 857-864. 2001
- Archaeal biodiversity in crystallizer ponds from a solar saltern: culture versus PCRS.. MICROBIAL ECOLOGY. 12-19. 2001
- Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front. MICROBIAL ECOLOGY. 193-202. 2001
- New insights on the phylogenetic position of diplonemids: GC content bias, differences of evolutionary rate and a new environmental sequence.. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2211-2219. 2001
- RISSC: A novel database for ribosomal 16S-23S RNA genes spacer regions.. NUCLEIC ACIDS RESEARCH. 178-180. 2001
- RISSC: a novel database for ribosomal 16S¿23 SRNA genes spacer regions. NUCLEIC ACIDS RESEARCH. 178-180. 2001
- Sequence microdiversity at the ribosomal RNA operons of Escherichia coli pyelonephritogenic strains.. CLINICAL MICROBIOLOGY AND INFECTION. 345-351. 2001
- The ROle of BUffering capacities in STabilising coastal lagoon ecosystems, Nearshore Coastal Oceanography.. CONTINENTAL SHELF RESEARCH. 2021-2041. 2001
- Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton.. NATURE. 603-607. 2001
- OSMOTICALY INDUCED RESPONSE IN REPRESENTATIVES OF HALOPHILIC PROKARYOTES: THE BACTERIUM HALOMONAS ELONGATA AND THE ARCHAEON HALOFERAX VOLCANII. JOURNAL OF BACTERIOLOGY. 5471-5481. 1997
- Osmotically induced response in representatives of halophilic prokaryotes: the Bacterium Halomonas elongata and the Archaeon Haloferax volcanii. JOURNAL OF BACTERIOLOGY. 5471-5481. 1997
- DIFFERENTIALY TRANSCRIBED REGIONS OF HALOFERAX VOLCANII GENOME DEPENDING ON THE MEDIUM SALINITY. JOURNAL OF BACTERIOLOGY. 309-313. 1996
- Differentially transcribed regions of Haloferax volcanii genome depending on the medium salinity. JOURNAL OF BACTERIOLOGY. 309-313. 1996
- LONG STRETCHE OF SHORT TANDEM REPEATS ARE PRESENT IN THE LARGEST REPLICONS OF THE ARCHAEA HALOFERAX MEDITERRANEI AND HALOFERAX VOLCANII AND COULD BE INVOLVED IN REPLICON PARTITIONING. MOLECULAR MICROBIOLOGY. 85-93. 1995
- Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning. MOLECULAR MICROBIOLOGY. 85-93. 1995
chapter
- Red, Extremely Holophilic, but not Archaeal: The Physiology of Salinibacter ruber, a Bacterium isolated from Saltern Crystalizer Ponds. Halophilic Microorganisms. 63-76. 2004
- Contribution of molecular techniques to the study of microbial diversity in hypersaline environments. Microbiology and Biogeochemistry of hypersaline environments. 27-38. 1998
congress communication

presentations

invited conference
- XVITH INTERNATIONAL SYMPOSIUM ON OCEANOGRAPHY OF THE BAY OF BISCAY (ISOBAY 16), Conferencia 2018
- "Much more than defence: the multiple functions and facets of CRISPR-Cas(SPP 2141)", Conferencia 2018
- "The Reef Microbiome at McGill's Bellairs Research Station in Barbados", Conferencia 2018
- Fine profile of the Mediterranean stratified and mixed water column revealed by metagenomic assembly and recruiment., Conferencia 2017
- MARINE MICROORGANISMS AND THEIR CONTRIBUTION TO GLOBAL BIOGEOCHEMICAL CYCLES', Conferencia 2017
- 14ht Conference on Aquatic Microbial Ecology, Conferencia 2015
- PHAGES AS GUARANTORS OF CLONAL DIVERSITY IN BACTERIA AND ARCHAEA, Conferencia 2011
- GENOMIC DIVERSITY OF THE MARINE COPIOTROPH ALTEROMONAS MACLEODII AT A SINGLE SITE IN THE DEEP WATER COMUMN OF THE MEDITERRANEAN, Conferencia 2011
- Metagenomics and the NGS Technology, Conferencia 2011
- Historias de dos Hiperhalóficlos: Salinibacter vs Haloquadratum, Conferencia 2007
- Ecological metagenomics, Conferencia 2007
- Metagenomics of the deep Mediterranean, Conferencia 2007
- Strain genome, species pan-genome and metagenome. The case of the square haloarchaeon, Conferencia 2006
- Genomes of hyperhalophiles. The environmental gene repertoire, Conferencia 2006
- Filogenia microbiana:¿árboles o catálogos de genes?, Conferencia 2003
- Fingerprinting of microbial communities., Conferencia