selected publications
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academic article
- Flexible genomic island conservation across freshwater and marine Methylophilaceae. ISME JOURNAL. 1-13. 2024
- Genomic Analysis of Antimicrobial Resistance in Pseudomonas aeruginosa from a ¿One Health¿ Perspective. MICROORGANISMS. 1-14. 2024
- Microdiversity in marine pelagic ammonia-oxidizing archaeal populations in a Mediterranean long-read metagenome. ENVIRON MICROBIOL. 1-13. 2024
- A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean. ISCIENCE. 1-16. 2023
- A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics. ENVIRONMENTAL MICROBIOME. 1-12. 2023
- Allelic diversity uncovers protein domains contributing to the emergence of antimicrobial resistance.. PLOS GENETICS. 1-24. 2023
- Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes.. MSYSTEMS. 1-18. 2023
- Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59. MSYSTEMS. 1-17. 2023
- Role of Relebactam in the Antibiotic Resistance Acquisition in Pseudomonas aeruginosa: In Vitro Study. ANTIBIOTICS-BASEL. 1-12. 2023
- Ecogenomics and metabolic potential of the South Atlantic Ocean microbiome.. SCIENCE OF THE TOTAL ENVIRONMENT. 1-20. 2021
- Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics.. FRONTIERS IN MICROBIOLOGY. 1-15. 2021
- Genomic Characterization of Imipenem- and Imipenem-Relebactam-Resistant Clinical Isolates of Pseudomonas aeruginosa.. MSPHERE. 1-10. 2021
- Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19.. FRONTIERS IN MICROBIOLOGY. 1-10. 2021
- Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle.. MSYSTEMS. 1-16. 2021
- The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE, Spread Unnoticed.. MSYSTEMS. 1-25. 2021
- The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics. ENVIRONMENTAL MICROBIOME. 1-15. 2021
- Dysbiosis in marine aquaculture revealed through microbiome analysis: reverse ecology for environmental sustainability.. FEMS MICROBIOLOGY ECOLOGY. 1-13. 2020
- Genomes of the ¿Candidatus Actinomarinales¿ Order: Highly Streamlined Marine Epipelagic Actinobacteria. MSYSTEMS. 1-19. 2020
- High-resolution structural insights into the heliorhodopsin family. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME. 1-11. 2020
- The Evolutionary Success of the Marine Bacterium SAR11 Analyzed through a Metagenomic Perspective. MSYSTEMS. 1-13. 2020
- Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil. MICROBIOME. 1-16. 2020
- Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype. MBIO. 1-18. 2019
- Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics.. FRONTIERS IN MICROBIOLOGY. 1-14. 2019
- Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment.. MICROBIOME. 1-19. 2018
- Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes.. ENVIRON MICROBIOL. 1-9. 2018
- Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean.. ISME JOURNAL. 1-6. 2018
- Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters.. PLOS GENETICS. 1-23. 2017
- New insights into marine group III Euryarchaeota, from dark to light.. ISME JOURNAL. 1-16. 2017
- Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs.. FRONTIERS IN MICROBIOLOGY. 2017
- Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea.. FRONTIERS IN MICROBIOLOGY. 1-15. 2016
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congress communication
- DINÁMICA ECO-EVOLUTIVA DE LA ADAPTACIÓN A AMBIENTES MARINOS A TRAVÉS DE METAGENÓMICA DE TERCERA GENERACIÓN. 2024
- Evolución del pangenoma del subclado Ia.3/VII de SAR11 endémico del Mediterráneo 2024
- Analysis of the pangenome in Thaumarchaeota from the western Mediterranean Sea in seasons with mixed and stratified water column 2023
- FArhodopsins, a widespread paralog of proteorhodopsin in aqua¿c bacteria with streamlined genomes 2023
- O-antigen diversity in order Pelagibacterales 2023
- Phosphate-related environmental genomic islands as drivers of adapta¿on to different oceanic regions in the streamlined HIMB59 2023
- Single-amplified genomes reveal most streamlined free-living marine bacteria 2023
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thesis