Publicaciones en VIVO

Mapa de la ciencia

Red de Coinvestigador

LOPEZ PEREZ, MARIO

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Positions

Profesor/a Ayudante Doctor/a, Producción Vegetal y Microbiología 2019 -
Profesor/a Contratado/a Doctor/a, Producción Vegetal y Microbiología 2022 -
INVESTIGADOR JUNIOR, Producción Vegetal y Microbiología 2018 - 2019
INVESTIGADOR SENIOR, Producción Vegetal y Microbiología 2016 - 2018
INVESTIGADOR JUNIOR, Producción Vegetal y Microbiología 2016
INVESTIGADOR CIENTIFICO, Producción Vegetal y Microbiología 2014 - 2016
APOYO TECNICO A LA INVESTIGACION A, Producción Vegetal y Microbiología 2012 - 2013
APOYO TECNICO A LA INVESTIGACION B, Producción Vegetal y Microbiología 2011 - 2012
APOYO A LA INVESTIGACION B, Producción Vegetal y Microbiología 2011

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selected publications

academic article
- Metagenome-derived virus-microbe ratios across ecosystems. ISME JOURNAL. 1552-1563. 2023
- Allelic diversity uncovers protein domains contributing to the emergence of antimicrobial resistance.. PLOS GENETICS. 1-24. 2023
- Evolutionary pathways for deep-sea adaptation in marine planktonic Actinobacteriota.. FRONTIERS IN MICROBIOLOGY. 1-12. 2023
- Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes.. MSYSTEMS. 1-18. 2023
- Microbe Profile: Alteromonas macleodii¿ a widespread, fast-responding,`interactive¿marine bacterium. MICROBIOLOGY. 12-36. 2023
- Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59. MSYSTEMS. 1-17. 2023
- Role of Relebactam in the Antibiotic Resistance Acquisition in Pseudomonas aeruginosa: In Vitro Study. ANTIBIOTICS-BASEL. 1-12. 2023
- Single-amplified genomes reveal most streamlined free-living marine bacteria. ENVIRON MICROBIOL. 1136-1154. 2023
- Vibrio floridensis sp. nov., a novel species closely related to the human pathogen Vibrio vulnificus isolated from a cyanobacterial bloom. INT J SYST EVOL MICR. 56-75. 2023
- Differences in gene expression patterns between cultured and natural Haloquadratum walsbyi ecotypes. FRONTIERS IN MICROBIOLOGY. 2022
- Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples. MSYSTEMS. 192-222. 2022
- Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples.. MSYSTEMS. 1-12. 2022
- Molecular mechanisms and drivers of pathogen emergence. TRENDS IN MICROBIOLOGY. 898-911. 2022
- Nasopharyngeal Microbiota as an early severity biomarker in COVID-19 hospitalised patients. JOURNAL OF INFECTION. 329-336. 2022
- Ecogenomics and metabolic potential of the South Atlantic Ocean microbiome.. SCIENCE OF THE TOTAL ENVIRONMENT. 1-20. 2021
- Ecogenomics and metabolic potential of the South Atlntic Ocean microbiome. SCIENCE OF THE TOTAL ENVIRONMENT. 142758-142789. 2021
- Ecological diversification reveals routes of pathogen emergence in endemic Vibrio vulnificus populations. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME. 40-52. 2021
- Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics. FRONTIERS IN MICROBIOLOGY. 2410-2435. 2021
- Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics.. FRONTIERS IN MICROBIOLOGY. 1-15. 2021
- Genomic Characterization of Imipenem- and Imipenem-Relebactam-Resistant Clinical Isolates of Pseudomonas aeruginosa. MSPHERE. 21-30. 2021
- Genomic Characterization of Imipenem- and Imipenem-Relebactam-Resistant Clinical Isolates of Pseudomonas aeruginosa.. MSPHERE. 1-10. 2021
- Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19.. FRONTIERS IN MICROBIOLOGY. 1-10. 2021
- Nasopharyngeal microbial communities of patients infected with SARS-CoV-2 that developed COVID-19. FRONTIERS IN MICROBIOLOGY. 560-580. 2021
- Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle. MSYSTEMS. 944-960. 2021
- Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle.. MSYSTEMS. 1-16. 2021
- RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content. PATTERNS . 274-284. 2021
- The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE, Spread Unnotice. MSYSTEMS. 511-531. 2021
- The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE, Spread Unnoticed. MSYSTEMS. 511-531. 2021
- The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE, Spread Unnoticed.. MSYSTEMS. 1-25. 2021
- Dysbiosis in marine aquaculture revealed through microbiome analysis: reverse ecology for environmental sustainability. FEMS MICROBIOLOGY ECOLOGY. 12-18. 2020
- Dysbiosis in marine aquaculture revealed through microbiome analysis: reverse ecology for environmental sustainability.. FEMS MICROBIOLOGY ECOLOGY. 1-13. 2020
- Ecogenomics and metabolic potential of the South Atlantic Ocean microbiome. SCIENCE OF THE TOTAL ENVIRONMENT. 142758-142762. 2020
- Ecogenomics of the SAR11 clade. ENVIRON MICROBIOL. 1748-1763. 2020
- Ecogenomics of the SAR11 clade.. ENVIRON MICROBIOL. 2020
- Genomes of the ¿Candidatus Actinomarinales¿ Order: Highly Streamlined Marine Epipelagic Actinobacteria. MSYSTEMS. 1-19. 2020
- Genomes of the ¿Candidatus Actinomarinales¿ Order: Highly Streamlined Marine Epipelagic Actinobacteria.. MSYSTEMS. 6-10. 2020
- Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments. MSYSTEMS. 1-5. 2020
- New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal.. MICROBIOME. 163-168. 2020
- PdMFS1 Transporter Contributes to Penicilliun digitatum Fungicide Resistance and Fungal Virulence during Citrus Fruit Infection. JOURNAL OF FUNGI. 100-101. 2020
- The Evolutionary Success of the Marine Bacterium SAR11 Analyzed through a Metagenomic Perspective. MSYSTEMS. 1-13. 2020
- The evolutionary success of the marine bacterium SAR11 analyzed through a metagenomic perspective.. MSYSTEMS. 5-9. 2020
- Differential contribution of the two major polygalacturonases from Penicillium digitatum to virulence towards citrus fruit. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 16-23. 2019
- Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype. MBIO. 1-18. 2019
- Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype. MBIO. 2852-2918. 2019
- Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment. MICROBIOME. 1-128. 2019
- Functional and Pharmacological Analyses of the Role of Penicillium digitatum Proteases on Virulence.. MICROORGANISMS. 0-7. 2019
- High prevalence of quorum-sensing and quorum-quenching activity among cultivable bacteria and metagenomic sequences in the Mediterranean Sea. GENES. 2-10. 2019
- Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC GENOMICS. 1-36. 2019
- Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes. ENVIRON MICROBIOL. 1-10. 2019
- Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics.. FRONTIERS IN MICROBIOLOGY. 1-14. 2019
- Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean. ISME JOURNAL. 2019
- Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, BIOLOGICAL SCIENCES (NASB). 2019
- Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment.. MICROBIOME. 1-19. 2018
- Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes.. ENVIRON MICROBIOL. 1-9. 2018
- Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean.. ISME JOURNAL. 1-6. 2018
- A Hybrid NRPS-PKS gene cluster related to the Bleomycin family of Antitumor antibiotics in Alteromonas macleodii Strains.. PLOS ONE. 2017
- Complete genome sequence of the copiotrophic marine bacterium Alteromonas macleodii strain ATCC 27126T. JOURNAL OF BACTERIOLOGY. 6998-6998. 2017
- Development of a green fluorescent tagged strain of Aspergillus carbonarius to monitor fungal colonization in grapes. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 135-140. 2017
- Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp nov. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICR. 119-132. 2017
- Flexible genomic islands as drivers of genome evolution... CURRENT OPINION IN MICROBIOLOGY. 154-160. 2017
- Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters. PLOS GENETICS. 2017
- Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters.. PLOS GENETICS. 1-23. 2017
- Genomes of Alteromonas australica, a world apart.. BMC GENOMICS. 483. 2017
- Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph. SCIENTIFIC REPORTS. 2017
- Genomes of ¿Spiribacter¿, a streamlined, successful halophilic bacterium. BMC GENOMICS. 787. 2017
- Genomic diversity of ¿deep ecotype¿ Alteromonas macleodii isolates: evidence for Pan-Mediterranean clonal frames. GENOME BIOLOGY AND EVOLUTION. 1220-1232. 2017
- Global occurrence and heterogeneity of the Roseobacter -clade species Ruegeria mobilis. ISME JOURNAL. 15. 2017
- Identification and functional analysis of Penicillium digitatum genes putatively involved in virulence towards citrus fruit.. MOLECULAR PLANT PATHOLOGY. 262-275. 2017
- Intra-and intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains. MICROBIAL ECOLOGY. 720-730. 2017
- Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water.. PLOS ONE. 2017
- Networking in microbes: conjugative elements and plasmids in the genus Alteromonas.. BMC GENOMICS. 1-15. 2017
- Not all particles are equal: the selective enrichment of particle-associated bacteria from the Mediterranean Sea. FRONTIERS IN MICROBIOLOGY. 2017
- Pangenome evolution in the marine bacterium Alteromonas... GENOME BIOLOGY AND EVOLUTION. 1556-1570. 2017
- Polyclonality of concurrent natural populations of Alteromonas macleodii. GENOME BIOLOGY AND EVOLUTION. 1360-1374. 2017
- Pseudorhizobium pelagicum gen. nov., sp. nov. isolated from a pelagic Mediterranean zone. SYSTEMATIC AND APPLIED MICROBIOLOGY. 293-299. 2017
- RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages.. BMC GENOMICS. 2017
- Spiribacter curvatus sp. nov., a moderately halophilic bacterium isolated from a saltern.. INT J SYST EVOL MICR. 4638-4643. 2017
- Thalassospira australica sp nov isolated from sea water.. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICR. 1091-1100. 2017
- Unravelling the contribution of the Penicillium expansum PeSte12 transcription factor to virulence during apple fruit infection. FOOD MICROBIOLOGY. 123-135. 2017
- Use of GFP-tagged strains of Penicillium digitatum and Penicillium expansum to study host-pathogen interactions in oranges and apples. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 162-170. 2017
- Flexible genomic islands as drivers of genome evolution. CURRENT OPINION IN MICROBIOLOGY. 154-160. 2016
- Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis. ISME JOURNAL. 1-5. 2016
- Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea.. FRONTIERS IN MICROBIOLOGY. 1-15. 2016
- Pangenome evolution in the marine bacterium Alteromonas. GENOME BIOLOGY AND EVOLUTION. 1556-1570. 2016
- Thalassospira australica sp. nov. isolated from sea water. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICR. 1-10. 2016
- Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICR. 119-132. 2015
- Identification and functional analysis of Penicillium digitatum genes putatively involved in virulence towards citrus fruit. MOLECULAR PLANT PATHOLOGY. 262-275. 2015
- Pseudorhizobium pelagicum gen. nov., sp. nov.Isolated from a pelagic Mediterranean zone.. SYSTEMATIC AND APPLIED MICROBIOLOGY. 1-7. 2015
- Spiribacter curvatus sp. nov., a moderately halophilic bacterium isolated from a saltern. INT J SYST EVOL MICR. 4638-4643. 2015
- Genome Sequence of ¿Thalassospira australica¿ NP3b2T Isolated from St. Kilda Beach, Tasman Sea. GENOME ANNOUNCEMENTS. 39-42. 2014
- Genomes of Alteromonas australica,a world apart. BMC GENOMICS. 1-5. 2014
- Homologous recombination is involved in the diversity of replacement flexible genomic islands in aquatic prokaryotes.. FRONTIERS IN GENETICS. 147-151. 2014
- Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water. PLOS ONE. 9-11. 2014
- RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages. BMC GENOMICS. 1-5. 2014
- A Hybrid NRPS-PKS Gene Cluster Related to the Bleomycin Family of Antitumor Antibiotics in Alteromonas macleodii Strains. PLOS ONE. 2013
- Genomes of Spiribacter, a streamlined, successful halophilic bacterium.. BMC GENOMICS. 1471-2164. 2013
- Genomic diversity of "deep ecotype" Alteromonas macleodii isolates: evidence for Pan-Mediterranean clonal frames.. GENOME BIOLOGY AND EVOLUTION. 1220-1232. 2013
- Intra and Intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains.. MICROBIAL ECOLOGY. 1-11. 2013
- Complete Genome Sequence of the Copiotrophic Marine Bacterium Alteromonas macleodii Strain ATCC 27126T.. JOURNAL OF BACTERIOLOGY. 6998-7001. 2012
- Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph.. SCIENTIFIC REPORTS. 1-11. 2012
- Polyclonality of concurrent natural populations of Alteromonas macleodii.. GENOME BIOLOGY AND EVOLUTION. 1-22. 2012
- Use of GFP-tagged strains of Penicillium digitatum and Penicillium expansum to study host-pathogen interactions in oranges and apples.. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 162-170. 2012
chapter
- Cholera Dynamics and the Emergence of Pandemic Vibrio cholerae. Vibrio spp. Infections. 127-147. 2023
- Marine Microbial Diversity. Molecular Diversity of Environmental Prokaryotes. 57-86. 2017
- The Family Alteromonadaceae. The Prokaryotes. 69-92. 2017
- The Diversity of Microbial Extremophiles. Molecular Diversity of Environmental Prokaryotes. 87-117. 2016
- The Family Alteromonadaceae. The Prokaryotes. 69-92. 2014
congress communication

presentations

invited conference
- Metastable evolutionary dynamics of the dominant marine bacteria SAR11, Conferencia 2020