PEREZ PEREZ, JOSE MANUEL

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Positions

Catedrático/a de Universidad, Biología Aplicada 2019 -
PDI INVESTIGADOR, Instituto de Bioingeniería 2009 -
MIEMBRO, Genética de la Regeneración y el Desarrollo Reproductivo en Plantas 2017 -
Profesor/a Titular Universidad, Biología Aplicada 2009 - 2019
Profesor/a Contratado/a Doctor/a, Biología Aplicada 2009
Ayudante de Universidad, Biología Aplicada 2001 - 2003
PDI INVESTIGADOR, Instituto de Bioingeniería 2003
FPI-GENERALITAT VALENCIANA, Instituto de Bioingeniería 1998 - 2001

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supported publications or other works

selected publications

academic article
- An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac distribution. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME. 1-10. 2024
- Ascorbate, plant hormones and their interactions during plant responses to biotic stress. PHYSIOLOGIA PLANTARUM. 1-16. 2024
- Connecting high-resolution 3D chromatin maps with cell division and cell differentiation at the root apical meristem. PLANT CELL REPORTS. 1-18. 2024
- Genes involved in auxin biosynthesis, transport and signalling underlie the extreme adventitious root phenotype of the tomato aer mutant. THEORETICAL AND APPLIED GENETICS. 1-18. 2024
- Identification of novel inhibitors of plant GH3 IAA-amido synthetases through molecular docking studies. PHYSIOLOGIA PLANTARUM. 1-13. 2024
- Menos fertilizantes y más legumbres: estrategias para reducir las emisiones de la agricultura y la ganadería. THE CONVERSATION. 1-4. 2024
- Recent advances in tomato gene editing. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 1-22. 2024
- Temporal profiling of physiological, histological, and transcriptomic dissection during auxin-induced adventitious root formation in tetraploid Robinia pseudoacacia micro-cuttings. PLANTA. 1-23. 2024
- A New In Vitro Growth System for Phenotypic Characterization and Seed Propagation of Arabidopsis thaliana. JOURNAL OF PLANT GROWTH REGULATION. 1-7. 2023
- Mapping of the Classical Mutation rosette Highlights a Role for Calcium in Wound-Induced Rooting. PLANT AND CELL PHYSIOLOGY. 152-164. 2023
- Optimization of Callus Induction and Shoot Regeneration from Tomato Cotyledon Explants. PLANTS-BASEL. 1-15. 2023
- Regulation of early seedling establishment and root development in Arabidopsis thaliana by light and carbohydrates. PLANTA. 1-15. 2023
- Role of reactive oxygen species in the modulation of auxin flux and root development in Arabidopsis thaliana. PLANT JOURNAL. 83-95. 2023
- Transcriptomic and hormonal analysis of the roots of maize seedlings grown hydroponically at low temperature. PLANT SCIENCE. 1-14. 2023
- A simple pipeline for cell cycle kinetic studies in the root apical meristem. JOURNAL OF EXPERIMENTAL BOTANY. 4683-4695. 2022
- Effects of auxin (indole-3-butyric acid) on adventitious root formation in peach-based Prunus rootstocks. PLANTS-BASEL. 1-18. 2022
- Identification of transcriptional networks involved in de novo organ formation in tomato hypocotyl explants. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 1-27. 2022
- Mitigation of calcium-related disorders in soilless production systems. AGRONOMY-BASEL. 1-17. 2022
- Root meristems: Don't TOR at the TOP. NATURE PLANTS. 729-730. 2022
- An auxin-mediated regulatory framework for wound¿induced adventitious root formation in tomato shoot explants. PLANT CELL AND ENVIRONMENT. 1642-1662. 2021
- Dynamic hormone gradients regulate wound-induced de novo organ formation in tomato hypocotyl explants. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 11843-11843. 2021
- Genome-wide high-resolution mapping of DNA methylation reveals epigenetic variation in the offspring of sexual and asexual propagation in Robinia pseudoacacia. PLANT CELL REPORTS. 2435-2447. 2021
- Genotype-dependent tipburn severity during lettuce hydroponic culture is associated with altered nutrient leaf content. AGRONOMY-BASEL. 616-616. 2021
- Methods of in situ quantitative root biology. PLANTS-BASEL. 2399-2399. 2021
- Overproduction of ABA in rootstocks alleviates salinity stress in tomato roots. PLANT CELL AND ENVIRONMENT. 2966-2986. 2021
- Plant development: from cells to systems biology. FRONTIERS IN PLANT SCIENCE. 810071-810071. 2021
- Tissue-specific metabolic reprogramming during wound induced de novo organ formation in tomato hypocotyl explants. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 10112-10112. 2021
- A quick protocol for the identification and characterization of early growth mutants in tomato. PLANT SCIENCE. 1-12. 2020
- Advances in plant regeneration: shake, rattle and roll. PLANTS-BASEL. 1-19. 2020
- Anchor Root Development: A World within Worlds. MOLECULAR PLANT. 1105-1107. 2020
- Understanding of adventitious root formation: what can we learn from comparative genetics?. FRONTIERS IN PLANT SCIENCE. 1-10. 2020
- A Genome-Wide Association Study Identifies New Loci Involved in Wound-Induced Lateral Root Formation in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE. 1-14. 2019
- A Network-Guided Genetic Approach to Identify Novel Regulators of Adventitious Root Formation in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE. 1-15. 2019
- Impact of overexpression of 9-cis-epoxycarotenoid dioxygenase on growth and gene expression under salinity stress. PLANT SCIENCE. 1-33. 2019
- Integration of Phenotype and Hormone Data during Adventitious Rooting in Carnation (Dianthus caryophyllus L.) Stem Cuttings. PLANTS-BASEL. 1-19. 2019
- Molecular and physiological control of adventitious rooting in cuttings: phytohormone action meets resource allocation. ANNALS OF BOTANY. 929-949. 2019
- A comprehensive phylogeny of auxin homeostasis genes involved in adventitious root formation in carnation stem cuttings. PLOS ONE. 1-28. 2018
- Enhanced conjugation of auxin by GH3 enzymes leads to poor adventitious rooting in carnation stem cuttings. FRONTIERS IN PLANT SCIENCE. 1-17. 2018
- INCURVATA11 and CUPULIFORMIS2 are redundant genes that encode epigenetic machinery components in Arabidopsis. PLANT CELL. 1-21. 2018
- Morphological characterization of root system architecture in diverse tomato genotypes during early growth. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 1-16. 2018
- Deficient glutamate biosynthesis triggers a concerted upregulation of ribosomal protein genes. SCIENTIFIC REPORTS. 6164-6164. 2017
- Regulation of hormonal control, cell reprograming and patterning during de novo root organogenesis. PLANT PHYSIOLOGY. 2017
- Vegetative propagation of argan tree (Argania spinosa (L.) Skeels) using in vitro germinated seeds and stem cuttings. SCIENTIA HORTICULTURAE. 81-87. 2017
- Identification of novel stress-responsive biomarkers from gene expression datasets in tomato roots. FUNCTIONAL PLANT BIOLOGY. 1-14. 2016
- Multiple factors influence adventitious rooting in carnation (Dianthus caryophyllus L.) stem cuttings. PLANT GROWTH REGULATION. 2016
- Root-to-shoot hormonal communication in contrasting rootstocks suggests an important role for the ethylene precursor aminocyclopropane-1-carboxylic acid in mediating plant growth under low-potassium nutrition in tomato. FRONTIERS IN PLANT SCIENCE. 1-16. 2016
- TOPOISOMERASE1alpha acts through two distinct mechanisms to regulate stele and columella stem cell maintenance in the Arabidopsis root. PLANT PHYSIOLOGY. 483-493. 2016
- The ANGULATA7 gene encodes a DnaJ-like zinc-finger-domain protein involved in chloroplast function and leaf development in Arabidopsis. PLANT JOURNAL. 2016
- Wound signaling of regenerative cell reprogramming. PLANT SCIENCE. 178-187. 2016
- Gene expression profiling during adventitious root formation in carnation stem cuttings. BMC GENOMICS. 1-18. 2015
- Quantitative analysis of adventitious root growth phenotypes in carnation stem cuttings. PLOS ONE. 1-21. 2015
- Leaf phenomics: a systematic reverse genetic screen for Arabidopsis leaf mutants.. PLANT JOURNAL. 878-891. 2014
- A quantitative framework for flower phenotyping in cultivated carnation. PLOS ONE. 2013
- Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. PLOS ONE. 2013
- Early steps of adventitious rooting: morphology, hormonal profiling and carbohydrate turnover in carnation stem cuttings. PHYSIOLOGIA PLANTARUM. 2013
- Functional redundancy and divergence within the Arabidopsis RETICULATA-RELATED gene family. PLANT PHYSIOLOGY. 589-603. 2013
- RETINOBLASTOMA-RELATED Protein Stimulates Cell Differentiation in the Arabidopsis Root Meristem by Interacting with Cytokinin Signaling. PLANT CELL. 2013
- incurvata13, a novel allele of AUXIN RESISTANT6, reveals a specific role for auxin and the SCF complex in Arabidopsis embryogenesis, vascular specification, and leaf flatness. PLANT PHYSIOLOGY. 1303-1320. 2013
- Cell expansion-mediated organ growth is affected by mutations in three EXIGUA genes. PLOS ONE. 36500-13. 2012
- Evaluation of ploidy level and endoreduplication in carnation (Dianthus spp.). PLANT SCIENCE. 2012
- Uncovering the post-embryonic functions of gametophytic- and embryonic-lethal genes. TRENDS IN PLANT SCIENCE. 336-345. 2011
- Whole organ, venation and epidermal cell morphological variations are correlated in the leaves of Arabidopsis mutants. PLANT CELL AND ENVIRONMENT. 2200-2211. 2011
- A role for AUXIN RESISTANT3 in the coordination of leaf growth. PLANT AND CELL PHYSIOLOGY. 1661-1673. 2010
- Analysis of ven3 and ven6 reticulate mutants reveals the importance of arginine biosynthesis in Arabidopsis leaf development. PLANT JOURNAL. 2010
- Differential contributions of ribosomal proteins to developmental processes in Arabidopsis thaliana leaves. PLANT JOURNAL. 2010
- Lessons from a search for leaf mutants in Arabidopsis thaliana. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY. 1-12. 2009
- QTL analysis of leaf architecture. JOURNAL OF PLANT RESEARCH. 2009
- Understanding synergy in genetic interactions. TRENDS IN GENETICS. 368-376. 2009
- Specialization of CDC27 function in the Arabidopsis thaliana anaphase-promoting complex (APC/C). PLANT JOURNAL. 78-89. 2008
- Hormone signaling and root development: an update from the latest Arabidopsis thaliana research. FUNCTIONAL PLANT BIOLOGY. 163-171. 2007
- Non-cell-autonomous rescue of APC/C function revealed by mosaic analysis of an Arabidopsis thaliana CDC27 homolog. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME. 13250-13255. 2006
- QTL mapping of floral and leaf morphology traits in Arabidopsis thaliana: evidence for modular genetic architecture. EVOLUTION & DEVELOPMENT. 259-271. 2005
- The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots. CELL. 1337-1349. 2005
- The ULTRACURVATA2 gene of Arabidopsis thaliana encodes an FK506-binding protein involved in auxin and brassinosteroid signaling. PLANT PHYSIOLOGY. 101-117. 2004
- Genetic analysis of natural variations in the architechture of vegetative leaves in Arabidopsis thaliana.. GENETICS. 893-915. 2002
- The UCU1 gene encodes an Arabidopsis SHAGGY/GSK3-like kinase required for cell expansion along the proximodistal axis.. DEVELOPMENTAL BIOLOGY. 161-173. 2002
- Cultivo bajo invernadero de variedades tradicionales de tomates alicantinas: interacción GxE para el redimiento.. ACTAS DE HORTICULTURA. 0-0. 2001
- Genetic and molecular analysis of INCURVATA2, a negative regulator of floral homeotic genes in the leaves of Arabidopsis thaliana.. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY. 53-54. 2001
- Genetic architecture of leaf morphogenesis in Arabidopsis thaliana.. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY. 61-62. 2001
- Mutations in the ULTRACURVATA2 gene of Arabidopsis thaliana, which encodes a FKBP-like protein, cause dwarfism, leaf epinasty and helical rotation of several organs.. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY. 49-50. 2001
- ULTRACURVATA1, a SHAGGY-like Arabidopsis gene required for cell elongation.. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY. 51-52. 2001
- A multiplex RT-PCR method for fluorescence-based semiautomated detection of gene expression in Arabidopsis thaliana. PLANTA. 606-608. 2000
- Genetic analysis of incurvata mutants reveals three independent genetic operations at work in Arabidopsis leaf morphogenesis. GENETICS. 1363-1377. 2000
book
- Biotecnología molecular de las plantas. Guía de prácticas. UNIVERSIDAD MIGUEL HERNÁNDEZ. 2023
chapter
- Adventitious Root Development in Ornamental Plants: Insights from Carnation Stem Cuttings. Root Engineering: Basic and Applied Concepts. 423-441. 2014
- Adventitious root development in ornamental plants: insights from carnation stem cuttings. Root engineering. 1-14. 2013
congress communication

presentations

invited conference
- Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis, Conferencia 2019
- Desarrollo de herramientas moleculares para la mejora genética en ornamentales, Conferencia 2015
- Integration of cell division and growth during plant development, Conferencia 2006
- Ciclo celular y desarrollo en plantas: el modelo del meristemo radicular de Arabidopsis, Conferencia 2005
- Ciclo celular y desarrollo en plantas: una visión desde las antípodas, Conferencia 2005
- Cell cycle and development in plants: a view from the root tip, Conferencia 2005
- Ciclo celular y desarrollo: una visión desde el meristemo radicular de Arabidopsis, Conferencia 2005
- Is the CDC27 function of the Arabidopsis APC/C complex encoded by HOBBIT and GIMLI, two paralogous genes?, Conferencia 2004
- The Arabidopsis HOBBIT gene encodes a CDC27 homolog that links the plant cell cycle to progression of cell differentiation, Conferencia 2004
- Genetic analysis of the ultracurvata mutants in Arabidopsis thaliana, Conferencia 1999

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PEREZ PEREZ, JOSE MANUEL

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supported publications or other works

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congress communication

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